Dina Sokol

Research Areas: Algorithms design and analysis, Pattern Matching, Computational Biology, Data Compression

Program Committe Membership: SPIRE 2008, CPM 2010, SPIRE 2011.

CISC 1115 - Introduction to Programming using Java (click link to go to course website) Note that this website will have all the course information, including assignments. Blackboard is not being used for this section of 1115.
CISC 3115 -- Introduction To Modern Programming Techniques using Java
Course material for CISC 3115 is now available on Blackboard.

♦ TRedD - Tandem Repeats Software	Funded by the NSF grant DB&I 0542751, we have developed software for locating tandem repeats, TRed, and a database of tandem repeats in the human genome, TRedD. Please visit our tandem server to read all about this, run the program, view repeats in the human genome, and obtain free source code.
♦ Dictionary Matching Software	*We developed 1D dictionary matching using small space with the compressed suffix tree as the underlying data structure.*
♦ Finding General Repeats via Smith-Waterman	*An online interface, in conjuction with our DIMACS Educational Module, to illustrate the SW algorithm for finding repeats in an input sequence.*
♦ TandemGraph	*This graphical tool was developed in java for modeling tandem repeats in a chromosome.*