Prof. Dina Sokol
Algorithms design and analysis,
Program Committe Membership: SPIRE 2008, CPM 2010, SPIRE 2011.
Original Software -- Open Source
♦ TRedD - Tandem Repeats Software
Funded by the NSF grant DB&I 0542751, we have developed software for locating tandem repeats, TRed, and a database
of tandem repeats in the human genome, TRedD.
Please visit our
server to read all about this, run the program, view repeats in the human genome, and obtain
free source code.
We developed 1D dictionary matching using small space with the compressed suffix tree as the underlying data structure.
||An online interface, in conjuction with our DIMACS Educational Module, to illustrate the SW algorithm for finding
repeats in an input sequence.
||This graphical tool was developed in java for modeling tandem repeats in a chromosome.
Courses - Fall 2017
Office: 3209d Ingersoll Hall
E-mail: sokol AT sci.brooklyn.cuny.edu
Phone: 718-951-5000 ext. 2065